H1-hESC — IGVFSM1920AEQT

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM1920AEQT/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1920AEQT",
11    "age": "unknown",
12    "aliases": [
13        "ansuman-satpathy:h1_gastruloid"
14    ],
15    "audit": {
16        "ERROR": [
17            {
18                "category": "inconsistent document type",
19                "detail": "In vitro system [IGVFSM1920AEQT](/in-vitro-systems/IGVFSM1920AEQT/) has a protocol [d8ce793f-933b-45ea-9611-1c3f80cb7e11](/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/) in `cell_fate_change_protocols` that does not have `document_type` cell fate change protocol. A document listed as a cell fate change protocol is expected to have a cell fate change protocol document type.",
20                "level": 60,
21                "level_name": "ERROR",
22                "name": "audit_cell_fate_change_protocol_document_type",
23                "path": "/in-vitro-systems/IGVFSM1920AEQT/"
24            }
25        ],
26        "INTERNAL_ACTION": [
27            {
28                "category": "mismatched status",
29                "detail": "Released in vitro system [IGVFSM1920AEQT](/in-vitro-systems/IGVFSM1920AEQT/) has in progress subobject document [d8ce793f-933b-45ea-9611-1c3f80cb7e11](/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/).",
30                "level": 30,
31                "level_name": "INTERNAL_ACTION",
32                "name": "audit_item_status",
33                "path": "/in-vitro-systems/IGVFSM1920AEQT/"
34            },
35            {
36                "category": "missing association",
37                "detail": "In vitro system [IGVFSM1920AEQT](/in-vitro-systems/IGVFSM1920AEQT/) is not associated with any file set, nor is the parent of any sample. Samples are expected to be associated with another sample or file set.",
38                "level": 30,
39                "level_name": "INTERNAL_ACTION",
40                "name": "audit_missing_association",
41                "path": "/in-vitro-systems/IGVFSM1920AEQT/"
42            },
43            {
44                "category": "missing publication",
45                "detail": "In vitro system [IGVFSM1920AEQT](/in-vitro-systems/IGVFSM1920AEQT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
46                "level": 30,
47                "level_name": "INTERNAL_ACTION",
48                "name": "audit_sample_missing_publication",
49                "path": "/in-vitro-systems/IGVFSM1920AEQT/"
50            }
51        ]
52    },
53    "award": {
54        "@id": "/awards/HG012076/",
55        "component": "mapping"
56    },
57    "cell_fate_change_protocol": "/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/",
58    "classifications": [
59        "gastruloid"
60    ],
61    "creation_timestamp": "2024-07-21T23:31:25.124831+00:00",
62    "demultiplexed_to": [],
63    "donors": [
64        {
65            "@id": "/human-donors/IGVFDO6638HIAD/",
66            "accession": "IGVFDO6638HIAD",
67            "status": "released"
68        }
69    ],
70    "file_sets": [],
71    "institutional_certificates": [],
72    "lab": {
73        "@id": "/labs/ansuman-satpathy/",
74        "title": "Ansuman Satpathy, Stanford"
75    },
76    "multiplexed_in": [],
77    "origin_of": [],
78    "parts": [],
79    "pooled_in": [],
80    "protocols": [
81        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
82    ],
83    "release_timestamp": "2025-03-07T01:11:46.515591+00:00",
84    "sample_terms": [
85        {
86            "@id": "/sample-terms/EFO_0003042/",
87            "status": "released",
88            "term_name": "H1-hESC"
89        }
90    ],
91    "schema_version": "27",
92    "sex": "male",
93    "sorted_fractions": [],
94    "sources": [
95        {
96            "@id": "/labs/danwei-huangfu/",
97            "status": "current",
98            "title": "Danwei Huangfu, MSKCC"
99        }
100    ],
101    "status": "released",
102    "submitted_by": {
103        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
104        "title": "Christopher Mcginnis"
105    },
106    "summary": "Homo sapiens (male) H1-hESC induced to gastrula for 2 days",
107    "targeted_sample_term": {
108        "@id": "/sample-terms/UBERON_00004734/",
109        "status": "released",
110        "term_name": "gastrula"
111    },
112    "taxa": "Homo sapiens",
113    "time_post_change": 2,
114    "time_post_change_units": "day",
115    "uuid": "d2388622-01aa-4301-aa59-4badc31f3dcb",
116    "virtual": false
117}