{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM3163XGNL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3163XGNL",
"age": "1",
"age_units": "year",
"aliases": [
"chongyuan-luo:C38_day7"
],
"audit": {
"ERROR": [
{
"category": "inconsistent document type",
"detail": "In vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) has a protocol [d8ce793f-933b-45ea-9611-1c3f80cb7e11](/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/) in `cell_fate_change_protocols` that does not have `document_type` cell fate change protocol. A document listed as a cell fate change protocol is expected to have a cell fate change protocol document type.",
"level": 60,
"level_name": "ERROR",
"name": "audit_cell_fate_change_protocol_document_type",
"path": "/in-vitro-systems/IGVFSM3163XGNL/"
}
],
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) has in progress subobject document [d8ce793f-933b-45ea-9611-1c3f80cb7e11](/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3163XGNL/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) has in progress subobject sample term [CL_0000057](/sample-terms/CL_0000057/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3163XGNL/"
},
{
"category": "missing association",
"detail": "In vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) is not associated with any file set, nor is the parent of any sample. Samples are expected to be associated with another sample or file set.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_association",
"path": "/in-vitro-systems/IGVFSM3163XGNL/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM3163XGNL/"
}
]
},
"award": {
"@id": "/awards/HG012079/",
"component": "networks"
},
"cell_fate_change_protocol": "/documents/d8ce793f-933b-45ea-9611-1c3f80cb7e11/",
"classifications": [
"reprogrammed cell specimen"
],
"creation_timestamp": "2024-11-15T19:20:16.080475+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"file_sets": [],
"institutional_certificates": [],
"lab": {
"@id": "/labs/chongyuan-luo/",
"title": "Chongyuan Luo, UCLA"
},
"lower_bound_age": 1,
"lower_bound_age_in_hours": 8760,
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-02-11T00:54:36.743497+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "in progress",
"term_name": "fibroblast"
}
],
"schema_version": "27",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/coriell/",
"status": "released",
"title": "Coriell"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/88fd5e07-3319-41c9-a006-ebfae224df5e/",
"title": "Jessica Van Hattem"
},
"submitter_comment": "This sample was originally originated_from /in-vitro-systems/IGVFSM6248OWYO/ which was replaced by a primary cell.",
"summary": "Homo sapiens (male) fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days",
"targeted_sample_term": {
"@id": "/sample-terms/EFO_0004905/",
"status": "released",
"term_name": "induced pluripotent stem cell"
},
"taxa": "Homo sapiens",
"time_post_change": 7,
"time_post_change_units": "day",
"upper_bound_age": 1,
"upper_bound_age_in_hours": 8760,
"uuid": "b4bb8660-039f-4a49-bf8e-7c7a82061fcb",
"virtual": false
}