HEK293T — IGVFSM4726LPSQ

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM4726LPSQ/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4726LPSQ",
11    "age": "unknown",
12    "aliases": [
13        "lea-starita:F9-DMS-Heavy-chain-antibody-Tile2-Replicate1-Bin3_idan"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "mismatched status",
19                "detail": "Released in vitro system [IGVFSM4726LPSQ](/in-vitro-systems/IGVFSM4726LPSQ/) has in progress subobject construct library set [IGVFDS1009OBGA](/construct-library-sets/IGVFDS1009OBGA/).",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_item_status",
23                "path": "/in-vitro-systems/IGVFSM4726LPSQ/"
24            },
25            {
26                "category": "missing association",
27                "detail": "In vitro system [IGVFSM4726LPSQ](/in-vitro-systems/IGVFSM4726LPSQ/) is not associated with any file set, nor is the parent of any sample. Samples are expected to be associated with another sample or file set.",
28                "level": 30,
29                "level_name": "INTERNAL_ACTION",
30                "name": "audit_missing_association",
31                "path": "/in-vitro-systems/IGVFSM4726LPSQ/"
32            },
33            {
34                "category": "missing publication",
35                "detail": "In vitro system [IGVFSM4726LPSQ](/in-vitro-systems/IGVFSM4726LPSQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
36                "level": 30,
37                "level_name": "INTERNAL_ACTION",
38                "name": "audit_sample_missing_publication",
39                "path": "/in-vitro-systems/IGVFSM4726LPSQ/"
40            }
41        ],
42        "NOT_COMPLIANT": [
43            {
44                "category": "missing plasmid map",
45                "detail": "Construct library set [IGVFDS1009OBGA](/construct-library-sets/IGVFDS1009OBGA/) does not have a plasmid map attached in `documents`. Construct library sets are expected to be associated with a plasmid map document.",
46                "level": 50,
47                "level_name": "NOT_COMPLIANT",
48                "name": "audit_construct_library_set_plasmid_map",
49                "path": "/construct-library-sets/IGVFDS1009OBGA/"
50            }
51        ]
52    },
53    "award": {
54        "@id": "/awards/HG011969/",
55        "component": "functional characterization"
56    },
57    "classifications": [
58        "cell line"
59    ],
60    "construct_library_sets": [
61        {
62            "@id": "/construct-library-sets/IGVFDS1009OBGA/",
63            "accession": "IGVFDS1009OBGA",
64            "file_set_type": "expression vector library",
65            "status": "in progress"
66        }
67    ],
68    "creation_timestamp": "2024-03-29T00:19:47.896468+00:00",
69    "demultiplexed_to": [],
70    "description": "poly-G384A cells containing F9 deep mutational scanning library incubated with Heavy chain antibody. Sequencing tile 2, biological replicate 1, bin 3.",
71    "donors": [
72        {
73            "@id": "/human-donors/IGVFDO1183RRBM/",
74            "accession": "IGVFDO1183RRBM",
75            "status": "released"
76        }
77    ],
78    "file_sets": [],
79    "institutional_certificates": [],
80    "lab": {
81        "@id": "/labs/doug-fowler/",
82        "title": "Doug Fowler, UW"
83    },
84    "moi": 1,
85    "multiplexed_in": [],
86    "notes": "The \"classification\" of this in vitro system was moved into the array property \"classifications.\"",
87    "nucleic_acid_delivery": "transfection",
88    "origin_of": [],
89    "parts": [],
90    "pooled_in": [],
91    "release_timestamp": "2024-03-22T23:04:37.145369+00:00",
92    "sample_terms": [
93        {
94            "@id": "/sample-terms/EFO_0001184/",
95            "status": "released",
96            "term_name": "HEK293T"
97        }
98    ],
99    "schema_version": "27",
100    "sex": "female",
101    "sorted_fractions": [],
102    "sources": [
103        {
104            "@id": "/labs/doug-fowler/",
105            "status": "current",
106            "title": "Doug Fowler, UW"
107        }
108    ],
109    "status": "released",
110    "submitted_by": {
111        "@id": "/users/98fb23d3-0d79-4c3d-981d-01539e6589f1/",
112        "title": "Idan Gabdank"
113    },
114    "summary": "Homo sapiens (female) HEK293T cell line transfected with a expression vector library (MOI of 1)",
115    "taxa": "Homo sapiens",
116    "uuid": "103c6e2d-7d50-49bc-9e8d-a6f3cc0fc93d",
117    "virtual": false
118}