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INDEXED
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MeasurementSet
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IGVFDS5192VPKQ
IGVFDS5192VPKQ
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
bradley-bernstein:scRNA Lib 72
buenrostro-bernstein:scRNA Lib 72
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0992VCWH
fastq
reads
R2
63
Read 2, Barcode index
IGVFFI7946BPBO
Illumina NovaSeq 6000
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI1478VZJX
fastq
reads
R2
247
Read 2, Barcode index
IGVFFI0896MCPD
Illumina NovaSeq 6000
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI4562ZCKO
fastq
reads
R1
247
Read 1
IGVFFI0896MCPD
Illumina NovaSeq 6000
564 MB
Jason Buenrostro, Broad
validated
IGVFFI6975THFK
fastq
reads
R1
63
Read 1
IGVFFI7946BPBO
Illumina NovaSeq 6000
564 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3932SXVT
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1318PLKS
bradley-bernstein:Donor 1503
buenrostro-bernstein:Donor 1503
female
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3638UVNV
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scATAC Lib 109
buenrostro-bernstein:scATAC Lib 109
Jason Buenrostro, Broad