IGVFFI2246NBHO

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI2246NBHO/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2246NBHO",
    "aliases": [
        "igvf:dali2222"
    ],
    "assay_titles": [
        "SUPERSTARR"
    ],
    "audit": {
        "ERROR": [
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2246NBHO](/reference-files/IGVFFI2246NBHO/) has `upload_status` invalidated. Files are expected to be validated.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2246NBHO/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released reference file [IGVFFI2246NBHO](/reference-files/IGVFFI2246NBHO/) has in progress subobject reference file [IGVFFI4139LADO](/reference-files/IGVFFI4139LADO/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/reference-files/IGVFFI2246NBHO/"
            },
            {
                "category": "mismatched status",
                "detail": "Released reference file [IGVFFI2246NBHO](/reference-files/IGVFFI2246NBHO/) has in progress subobject measurement set [IGVFDS5330YIDV](/measurement-sets/IGVFDS5330YIDV/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/reference-files/IGVFFI2246NBHO/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012047/",
        "component": "networks"
    },
    "content_type": "genome reference",
    "controlled_access": false,
    "creation_timestamp": "2023-05-08T17:16:34.568962+00:00",
    "derived_from": [
        "/reference-files/IGVFFI4139LADO/"
    ],
    "external": false,
    "file_format": "fasta",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS5330YIDV/",
        "accession": "IGVFDS5330YIDV",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/tissues/IGVFSM3939SHHK/",
                "accession": "IGVFSM3939SHHK",
                "classifications": [
                    "tissue"
                ],
                "disease_terms": [
                    {
                        "@id": "/phenotype-terms/MONDO_0015924/",
                        "summary": "pulmonary arterial hypertension",
                        "term_name": "pulmonary arterial hypertension"
                    }
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002369/",
                        "term_name": "adrenal gland"
                    }
                ],
                "summary": "adrenal gland tissue (cellular sub pool: AT9029), male, Mus musculus B6XCast (15-25 months) associated with pulmonary arterial hypertension, treated with 10 mM leucine for 6 hours",
                "taxa": "Mus musculus",
                "treatments": [
                    {
                        "@id": "/treatments/612fd456-886b-412d-b935-c5cac7a1df21/",
                        "purpose": "stimulation",
                        "summary": "Treatment of 10 mM leucine for 6 hours",
                        "treatment_term_name": "leucine"
                    }
                ]
            }
        ],
        "summary": "SUPERSTARR"
    },
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI2246NBHO/@@download/IGVFFI2246NBHO.fasta.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ting-wang/",
        "title": "Ting Wang, WashU"
    },
    "loci_list_for": [],
    "md5sum": "7f1917dea86105dd9d2582c0a91c3155",
    "notes": "This publicly available file was previously pending or file not found upload_status, and was moved to invalidated upload_status.",
    "release_timestamp": "2023-06-04T01:08:18.132670+00:00",
    "s3_uri": "s3://igvf-files-dev/2023/05/08/5dc0e780-0d8e-4902-a9e7-cce3b0380f1f/IGVFFI2246NBHO.fasta.gz",
    "schema_version": "15",
    "status": "released",
    "submitted_by": {
        "@id": "/users/1e75d989-a438-4d77-a451-8a297fd3636e/",
        "title": "Ian Whaling"
    },
    "summary": "genome reference",
    "upload_status": "invalidated",
    "uuid": "5dc0e780-0d8e-4902-a9e7-cce3b0380f1f"
}