IGVFFI5183LDFN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5183LDFN/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5183LDFN",
10    "aliases": [
11        "bradley-bernstein:SS-LS_2029_R2",
12        "bradley-bernstein:SS-LS_243_R2",
13        "buenrostro-bernstein:SS-LS_2029_R2",
14        "buenrostro-bernstein:SS-LS_243_R2"
15    ],
16    "assay_titles": [
17        "SHARE-seq"
18    ],
19    "audit": {
20        "INTERNAL_ACTION": [
21            {
22                "category": "mismatched status",
23                "detail": "Released sequence file [IGVFFI5183LDFN](/sequence-files/IGVFFI5183LDFN/) has in progress subobject platform term [EFO_0008637](/platform-terms/EFO_0008637/).",
24                "level": 30,
25                "level_name": "INTERNAL_ACTION",
26                "name": "audit_item_status",
27                "path": "/sequence-files/IGVFFI5183LDFN/"
28            }
29        ]
30    },
31    "award": {
32        "@id": "/awards/HG011986/",
33        "component": "mapping"
34    },
35    "content_md5sum": "f2c27f96e7fcde7e8ce2957ffa5ce216",
36    "content_type": "reads",
37    "controlled_access": false,
38    "creation_timestamp": "2023-09-05T19:27:57.411059+00:00",
39    "derived_manually": false,
40    "externally_hosted": false,
41    "file_format": "fastq",
42    "file_set": {
43        "@id": "/measurement-sets/IGVFDS3638UVNV/",
44        "@type": [
45            "MeasurementSet",
46            "FileSet",
47            "Item"
48        ],
49        "accession": "IGVFDS3638UVNV",
50        "assay_term": {
51            "@id": "/assay-terms/OBI_0002631/",
52            "term_name": "single-cell RNA sequencing assay"
53        },
54        "data_use_limitation_summaries": [
55            "no certificate"
56        ],
57        "file_set_type": "experimental data",
58        "samples": [
59            {
60                "@id": "/tissues/IGVFSM3932SXVT/",
61                "@type": [
62                    "Tissue",
63                    "Biosample",
64                    "Sample",
65                    "Item"
66                ],
67                "accession": "IGVFSM3932SXVT",
68                "classifications": [
69                    "tissue"
70                ],
71                "sample_terms": [
72                    {
73                        "@id": "/sample-terms/UBERON_0000955/",
74                        "status": "released",
75                        "term_name": "brain"
76                    }
77                ],
78                "status": "released",
79                "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)",
80                "taxa": "Mus musculus"
81            }
82        ],
83        "status": "released",
84        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
85    },
86    "file_size": 411143510,
87    "gene_list_for": [],
88    "href": "/sequence-files/IGVFFI5183LDFN/@@download/IGVFFI5183LDFN.fastq.gz",
89    "illumina_read_type": "R2",
90    "input_file_for": [
91        "/sequence-files/IGVFFI4710CQYT/"
92    ],
93    "integrated_in": [],
94    "lab": {
95        "@id": "/labs/jason-buenrostro/",
96        "title": "Jason Buenrostro, Broad"
97    },
98    "loci_list_for": [],
99    "maximum_read_length": 149,
100    "md5sum": "2a039f2e8f382ca37d0c4e0e0fa7dbd1",
101    "mean_read_length": 149,
102    "minimum_read_length": 149,
103    "quality_metrics": [],
104    "read_count": 8347681,
105    "read_names": [
106        "Read 2",
107        "Barcode index"
108    ],
109    "release_timestamp": "2025-03-28T21:22:37.157876+00:00",
110    "schema_version": "16",
111    "seqspecs": [
112        "/configuration-files/IGVFFI9559QEAH/"
113    ],
114    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
115    "sequencing_platform": {
116        "@id": "/platform-terms/EFO_0008637/",
117        "status": "in progress",
118        "term_name": "Illumina NovaSeq 6000"
119    },
120    "sequencing_run": 243,
121    "status": "released",
122    "submitted_by": {
123        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
124        "title": "Siddarth Wekhande"
125    },
126    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-154_L2_SS-PKR-129_SS-V1-RIGHT-HALF_R2.fastq.gz",
127    "summary": "R2 reads from sequencing run 243",
128    "upload_status": "validated",
129    "uuid": "1c7938a9-fc9a-4392-bea4-ed35f99cb4ac"
130}