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MeasurementSet
Measurement Set Details
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Assay
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SHARE-seq
1
in vitro CRISPR screen assay
1
in vitro CRISPR screen using flow cytometry
1
single-cell ATAC-seq
1
single-cell RNA sequencing assay
1
Preferred Assay Title
All
None
VAMP-seq
2
10x multiome
1
SHARE-seq
1
Variant FlowFISH
1
Construct Library Data
All
None
guide library
3
expression vector library
1
Investigated Gene
All
None
INTS11
1
Sequencing Platform
All
None
Illumina HiSeq 2000
1
Status
released
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ID
Accession
Aliases
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Assay Term
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File Set Type
Functional Assay Mechanisms
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Preferred Assay Title
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Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/measurement-sets/IGVFDS1953KIOT/
IGVFDS1953KIOT
lea-starita:F9-DMS-Heavy-chain-antibody-Tile2-Replicate1-Bin3-FileSet_idan
igvf:my-alias
/assay-terms/OBI_0003659/
/awards/HG011969/
/human-donors/IGVFDO1183RRBM/
experimental data
/labs/doug-fowler/
VAMP-seq
/in-vitro-systems/IGVFSM4726LPSQ/
released
VAMP-seq integrating a expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Homo sapiens
ff3751eb-8590-4c56-ab5d-5b00960f510a
/measurement-sets/IGVFDS5518TESD/
IGVFDS5518TESD
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing_idan
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6858FUVX/
released
prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd86ed6d-e3d5-45d6-b8fb-ae5e113190b2
/measurement-sets/IGVFDS3910MZMQ/
IGVFDS3910MZMQ
igvf:multiome_scatac_seq
/assay-terms/OBI_0002764/
/awards/HG012051/
/human-donors/IGVFDO9208RPQQ/
experimental data
/labs/danwei-huangfu/
VAMP-seq
/in-vitro-systems/IGVFSM2795QSOV/
released
VAMP-seq integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Homo sapiens
5663d0c7-faee-4c10-8ef5-c827fd74ad28
/measurement-sets/IGVFDS2075SWXE/
IGVFDS2075SWXE
igvf:multiome_scrna_seq
/assay-terms/OBI_0002631/
/awards/HG012051/
/human-donors/IGVFDO9208RPQQ/
experimental data
/labs/danwei-huangfu/
10x multiome
/in-vitro-systems/IGVFSM2795QSOV/
released
single-cell RNA sequencing assay (10x multiome) integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Homo sapiens
4102848f-4d47-4fd4-9491-b77ce7c9dbb1
/measurement-sets/IGVFDS1317BKCD/
IGVFDS1317BKCD
lior-pachter:share_seq
/assay-terms/NTR_0000739/
/awards/HG012077/
/rodent-donors/IGVFDO8570HWEN/
experimental data
/labs/lior-pachter/
SHARE-seq
/tissues/IGVFSM3939SHHK/
released
SHARE-seq (SHARE-seq)
Mus musculus
269ae1c1-060c-4ef4-8903-2284689779ed