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MeasurementSet
Measurement Set Details
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Assay
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flow cytometry assay
2
SHARE-seq
1
in vitro CRISPR screen assay
1
in vitro CRISPR screen using flow cytometry
1
single-cell ATAC-seq
1
single-cell RNA sequencing assay
1
Preferred Assay Title
All
None
VAMP-seq
4
10x multiome
1
SHARE-seq
1
Variant-EFFECTS
1
Construct Library Data
All
None
expression vector library
3
guide library
3
Investigated Gene
All
None
INTS11
3
Sequencing Platform
All
None
Illumina HiSeq 2000
1
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7 items
ID
Accession
Aliases
Alternate Accessions
Assay Targeted Genes
Assay Term
Award
Donors
File Set Type
Functional Assay Mechanisms
Lab
Preferred Assay Title
Protocols
Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/measurement-sets/IGVFDS1953KIOT/
IGVFDS1953KIOT
lea-starita:F9-DMS-Heavy-chain-antibody-Tile2-Replicate1-Bin3-FileSet_idan
igvf:my-alias
/assay-terms/OBI_0003659/
/awards/HG011969/
/human-donors/IGVFDO1183RRBM/
experimental data
/labs/doug-fowler/
VAMP-seq
/in-vitro-systems/IGVFSM4726LPSQ/
released
VAMP-seq integrating a expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Homo sapiens
ff3751eb-8590-4c56-ab5d-5b00960f510a
/measurement-sets/IGVFDS5518TESD/
IGVFDS5518TESD
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing_idan
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6858FUVX/
released
prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd86ed6d-e3d5-45d6-b8fb-ae5e113190b2
/measurement-sets/IGVFDS4947SYUV/
IGVFDS4947SYUV
lea-starita:F9-DMS-Light-chain-antibody-Tile2-Replicate1-Bin4-FileSet_idan
/assay-terms/OBI_0000916/
/awards/HG011969/
/human-donors/IGVFDO1183RRBM/
experimental data
/labs/doug-fowler/
VAMP-seq
/in-vitro-systems/IGVFSM5909OHED/
revoked
VAMP-seq integrating a expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Homo sapiens
fc2de044-7ae5-4861-8ea2-dc0d2f2cd6cd
/measurement-sets/IGVFDS9381NVXK/
IGVFDS9381NVXK
lea-starita:F9-DMS-Strep-II-tag-antibody-Tile1-Replicate3-Bin4-FileSet_idan
/assay-terms/OBI_0000916/
/awards/HG011969/
/human-donors/IGVFDO1183RRBM/
experimental data
/labs/doug-fowler/
VAMP-seq
/in-vitro-systems/IGVFSM9553PSZF/
archived
VAMP-seq integrating a expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Homo sapiens
fb6a3392-1e6f-4114-b056-f7429e0194a6
/measurement-sets/IGVFDS3910MZMQ/
IGVFDS3910MZMQ
igvf:multiome_scatac_seq
/assay-terms/OBI_0002764/
/awards/HG012051/
/human-donors/IGVFDO9208RPQQ/
experimental data
/labs/danwei-huangfu/
VAMP-seq
/in-vitro-systems/IGVFSM2795QSOV/
released
VAMP-seq integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Homo sapiens
5663d0c7-faee-4c10-8ef5-c827fd74ad28
/measurement-sets/IGVFDS2075SWXE/
IGVFDS2075SWXE
igvf:multiome_scrna_seq
/assay-terms/OBI_0002631/
/awards/HG012051/
/human-donors/IGVFDO9208RPQQ/
experimental data
/labs/danwei-huangfu/
10x multiome
/in-vitro-systems/IGVFSM2795QSOV/
released
single-cell RNA sequencing assay (10x multiome) integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Homo sapiens
4102848f-4d47-4fd4-9491-b77ce7c9dbb1
/measurement-sets/IGVFDS1317BKCD/
IGVFDS1317BKCD
lior-pachter:share_seq
/assay-terms/NTR_0000739/
/awards/HG012077/
/rodent-donors/IGVFDO8570HWEN/
experimental data
/labs/lior-pachter/
SHARE-seq
/tissues/IGVFSM3939SHHK/
released
SHARE-seq (SHARE-seq)
Mus musculus
269ae1c1-060c-4ef4-8903-2284689779ed