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11 items
MeasurementSet
IGVFDS1953KIOT
CRISPR prime editing VAMP-seq integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Doug Fowler, UW
Sample Summary
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
released
MeasurementSet
IGVFDS5518TESD
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
Homo sapiens (male) Jurkat cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
released
MeasurementSet
IGVFDS4947SYUV
VAMP-seq integrating an expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Doug Fowler, UW
Sample Summary
Homo sapiens (female) HEK293T cell line transfected with a expression vector library (MOI of 1)
revoked
MeasurementSet
IGVFDS9381NVXK
VAMP-seq integrating an expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
Doug Fowler, UW
Sample Summary
Homo sapiens (female) HEK293T cell line transfected with a expression vector library (MOI of 1)
archived
AuxiliarySet
IGVFDS8023FPBJ
cell hashing barcode sequencing
J. Michael Cherry, Stanford
Summary
cell hashing barcode sequencing for CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
revoked
ConstructLibrarySet
IGVFDS7068CPID
guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanfordloci
Selection Criteria
sequence variants
released
intermediate
AnalysisSet
IGVFDS7640LVLT
Unspecified assay: alignments, genomic_elements, genomic_elements_genes, genomic_elements_genes_biosamples, genomic_elements_genes_biosamples_donors and 6 more
J. Michael Cherry, Stanford
released
MeasurementSet
IGVFDS3910MZMQ
CRISPR VAMP-seq integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Danwei Huangfu, MSKCC
Sample Summary
Homo sapiens (female) K562 cell line transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS4435CQCE
Unspecified assay
J. Michael Cherry, Stanford
released
MeasurementSet
IGVFDS2075SWXE
CRISPR scRNA-seq integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
Danwei Huangfu, MSKCC
Sample Summary
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neural progenitor cell for 30 minutes (cellular sub pool: K80_A2); Homo sapiens (male) endothelial cell line (sorting details: detail of the fraction) depleted of lipopolysaccharide for 6 hours, transfected with a guide library; ... and 4 more samples
released
MeasurementSet
IGVFDS1317BKCD
SHARE-seq (SHARE-seq)
Lior Pachter, Caltech
Sample Summary
Mus musculus B6XCast (male, 15-25 months) adrenal gland tissue (cellular sub pool: AT9029) associated with pulmonary arterial hypertension, treated with 10 mM leucine for 6 hours