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File Set Type

10 items
  • MeasurementSet
    IGVFDS1953KIOT
    VAMP-seq integrating an expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
    Doug Fowler, UW
    Sample Summary
    HEK293T cell line, female, Homo sapiens transfected with a expression vector library (MOI of 1)
    released
  • MeasurementSet
    IGVFDS5518TESD
    CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    Jurkat cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
    released
  • MeasurementSet
    IGVFDS4947SYUV
    VAMP-seq integrating an expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
    Doug Fowler, UW
    Sample Summary
    HEK293T cell line, female, Homo sapiens transfected with a expression vector library (MOI of 1)
    revoked
  • MeasurementSet
    IGVFDS9381NVXK
    VAMP-seq integrating an expression vector library of tile tile3 of INTS11 (AA 299-461) (sequence variants)
    Doug Fowler, UW
    Sample Summary
    HEK293T cell line, female, Homo sapiens transfected with a expression vector library (MOI of 1)
    archived
  • ConstructLibrarySet
    IGVFDS7068CPID
    guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanfordloci
    Selection Criteria
    sequence variants
    released
  • intermediate
    AnalysisSet
    IGVFDS7640LVLT
    Unspecified assay: alignments, genome reference, peaks, sparse gene count matrix, transcriptome alignments
    J. Michael Cherry, Stanford
    released
  • MeasurementSet
    IGVFDS3910MZMQ
    CRISPR VAMP-seq integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
    Danwei Huangfu, MSKCC
    Sample Summary
    K562 cell line, female, Homo sapiens transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS4435CQCE
    Unspecified assay
    J. Michael Cherry, Stanford
    released
  • MeasurementSet
    IGVFDS2075SWXE
    CRISPR single-cell RNA sequencing assay (10x multiome) integrating a guide (sgRNA) library targeting TF binding sites, phenotype-associated variants genome-wide associated with DiGeorge syndrome
    Danwei Huangfu, MSKCC
    Sample Summary
    K562 cell line, female, Homo sapiens transfected with a guide library
    released
  • MeasurementSet
    IGVFDS1317BKCD
    SHARE-seq (SHARE-seq)
    Lior Pachter, Caltech
    Sample Summary
    adrenal gland tissue (cellular sub pool: AT9029), male, Mus musculus B6XCast (15-25 months) associated with pulmonary arterial hypertension, treated with 10 mM leucine for 6 hours
    released